Papers including work performed at the Genomics Platform

Alphabetical order of first authors names

• Amirsoleimani A, Brion G, Francois P. Identifying metal resistance genes in Staphylococcus species isolated from wastewater and streams receiving treated effluent. Environ Eng Sci. 2022 Nov 9;39(11):866-876.  > Journal
• Chauchet X, Cons L, Chatel L, Daubeuf B, Didelot G, Moine V, Chollet D, Malinge P, Pontini G, Masternak K, Ferlin W, Buatois V, Shang L. CD47xCD19 bispecific antibody triggers recruitment and activation of innate immune effector cells in a B-cell lymphoma xenograft model. Exp Hematol Oncol. 2022 May 10;11(1):26.  > Pubmed
• Dietschi Q, Tuberosa J, Fodoulian L, Boillat M, Kan C, Codourey J, Pauli V, Feinstein P, Carleton A, Rodriguez I. Clustering of vomeronasal receptor genes is required for transcriptional stability but not for choice. Sci Adv. 2022 Nov 18;8(46):eabn7450.  > Pubmed
• Durand BARN, Yahiaoui Martinez A, Baud D, François P, Lavigne JP, Dunyach-Remy C. Comparative genomics analysis of two Helcococcus kunzii strains co-isolated with Staphylococcus aureus from diabetic foot ulcers. Genomics. 2022 May;114(3):110365.  > Pubmed
• Gloor Y, Matthey A, Sobo K, Mouterde M, Kosek E, Pickering G, Poloni ES, Cedraschi C, Ehret G, Desmeules JA. Uncovering a genetic polymorphism located in Huntingtin associated protein 1 in modulation of central pain sensitization signaling pathways. Front Neurosci. 2022 Jun 28;16:807773.  > Pubmed
• Horgue LF, Assens A, Fodoulian L, Marconi L, Tuberosa J, Haider A, Boillat M, Carleton A, Rodriguez I. Transcriptional adaptation of olfactory sensory neurons to GPCR identity and activity. Nat Commun. 2022 May 25;13(1):2929.
• Kieser S, Zdobnov EM, Trajkovski M. Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart. PLoS Comput Biol. 2022 Mar 8;18(3):e1009947.  > Pubmed
• Kutaish H, Bengtsson L, Matthias Tscholl P, Marteyn A, Braunersreuther V, Guérin A, Béna F, Gimelli S, Longet D, Ilmjärv S, Dietrich PY, Gerstel E, Jaquet V, Hannouche D, Menetrey J, Assal M, Krause KH, Cosset E, Tieng V. Hyaline Cartilage Microtissues Engineered from Adult Dedifferentiated Chondrocytes: Safety and Role of WNT Signaling. Stem Cells Transl Med. 2022 Dec 30;11(12):1219-1231.
• Lunghi M, Kloehn J, Krishnan A, Varesio E, Vadas O, Soldati-Favre D. Pantothenate biosynthesis is critical for chronic infection by the neurotropic parasite Toxoplasma gondii. Nat Commun. 2022 Jan 17;13(1):345. 
• Maitre E, Cornet E, Debliquis A, Drenou B, Gravey F, Chollet D, Cheze S, Docquier M, Troussard X, Matthes T. Hairy cell leukemia: a specific 17-gene expression signature points to new targets for therapy. J Cancer Res Clin Oncol. 2022 Aug;148(8):2013-2022.  > Pubmed
• Manna AC, Leo S, Girel S, González-Ruiz V, Rudaz S, Francois P, Cheung AL. Teg58, a small regulatory RNA, is involved in regulating arginine biosynthesis and biofilm formation in Staphylococcus aureus. Sci Rep. 2022 Sep 2;12(1):14963.  > Pubmed
• Miozzo F, Valencia-Alarcón EP, Stickley L, Majcin Dorcikova M, Petrelli F, Tas D, Loncle N, Nikonenko I, Bou Dib P, Nagoshi E. Maintenance of mitochondrial integrity in midbrain dopaminergic neurons governed by a conserved developmental transcription factor. Nat Commun. 2022 Mar 17;13(1):1426.  > Pubmed
• Mohammadi Ghahhari N, Sznurkowska MK, Hulo N, Bernasconi L, Aceto N, Picard D. Cooperative interaction between ERα and the EMT-inducer ZEB1 reprograms breast cancer cells for bone metastasis. Nat Commun. 2022 Apr 19;13(1):2104.  > Pubmed
• Mouterde M, Daali Y, Rollason V, Čížková M, Mulugeta A, Al Balushi KA, Fakis G, Constantinidis TC, Al-Thihli K, Černá M, Makonnen E, Boukouvala S, Al-Yahyaee S, Yimer G, Černý V, Desmeules J, Poloni ES. Joint analysis of phenotypic and genomic diversity sheds light on the evolution of xenobiotic metabolism in humans. Genome Biol Evol. 2022 Dec 8;14(12):evac167.  > Pubmed
• Petitpierre M, Stenz L, Paoloni-Giacobino A. Epigenomic changes after acupuncture treatment in patients suffering from burnout. Complement Med Res. 2022;29(2):109-119.  > Pubmed
• Ramzy GM, Boschung L, Koessler T, Delucinge-Vivier C, Docquier M, McKee TA, Rubbia-Brandt L, Nowak-Sliwinska P. FOLFOXIRI resistance induction and characterization in human colorectal cancer cells. Cancers (Basel). 2022 Sep 30;14(19):4812.  > Pubmed
• Roth M, Goodall ECA, Pullela K, Jaquet V, François P, Henderson IR, Krause KH. Transposon-Directed Insertion-Site Sequencing Reveals Glycolysis Gene gpmA as Part of the H₂O₂ Defense Mechanisms in Escherichia coli. Antioxidants (Basel). 2022 Oct 18;11(10):2053.
• Roth M, Jaquet V, Lemeille S, Bonetti EJ, Cambet Y, François P, Krause KH. Transcriptomic analysis of E. coli after exposure to a sublethal concentration of hydrogen peroxide revealed a coordinated up-regulation of the cysteine biosynthesis pathway. Antioxidants (Basel). 2022 Mar 28;11(4):655.  > Pubmed
• van der Mee-Marquet N, Dos Santos S, Diene SM, Duflot I, Mereghetti L, Valentin AS, François P, On Behalf Of The Spiadi Collaborative Group. Strong biofilm formation and low cloxacillin susceptibility in biofilm-growing CC398 Staphylococcus aureus responsible for bacteremia in French intensive care units, 2021. Microorganisms. 2022 Sep 16;10(9):1857.  > Pubmed
• Vogg MC, Ferenc J, Buzgariu WC, Perruchoud C, Sanchez PGL, Beccari L, Nuninger C, Le Cras Y, Delucinge-Vivier C, Papasaikas P, Vincent S, Galliot B, Tsiairis CD. The transcription factor Zic₄ promotes tentacle formation and prevents epithelial transdifferentiation in Hydra. Sci Adv. 2022 Dec 23;8(51):eabo0694.  > Pubmed