Papers including work performed at the Genomics Platform

Alphabetical order of first authors names

• Amirsoleimani A, Brion G, Francois P. Co-carriage of metal and antibiotic resistance genes in sewage-associated Staphylococci. Genes (Basel). 2021 Sep 23;12(10):1473.  > Pubmed
• Beccari L, Jaquier G, Lopez-Delisle L, Rodriguez-Carballo E, Mascrez B, Gitto S, Woltering J, Duboule D. Dbx2 regulation in limbs suggests interTAD sharing of enhancers. Dev Dyn. 2021 Sep;250(9):1280-1299.  > Pubmed
• Bibert S, Guex N, Lourenco J, Brahier T, Papadimitriou-Olivgeris M, Damonti L, Manuel O, Liechti R, Götz L, Tschopp J, Quinodoz M, Vollenweider P, Pagani JL, Oddo M, Hügli O, Lamoth F, Erard V, Voide C, Delorenzi M, Rufer N, Candotti F, Rivolta C, Boillat-Blanco N, Bochud PY; RegCOVID Study Group. Transcriptomic signature differences between SARS-CoV-2 and influenza virus infected patients. Front Immunol. 2021 May 31;12:666163.  > Pubmed
• Buvelot H, Roth M, Jaquet V, Lozkhin A, Renzoni A, Bonetti EJ, Gaia N, Laumay F, Mollin M, Stasia MJ, Schrenzel J, François P, Krause KH. Hydrogen peroxide affects growth of S. aureus through downregulation of genes involved in pyrimidine biosynthesis. Front Immunol. 2021 Sep 7;12:673985.  > Pubmed
• Cordey S, Laubscher F, Hartley MA, Junier T, Keitel K, Docquier M, Guex N, Iseli C, Vieille G, Le Mercier P, Gleizes A, Samaka J, Mlaganile T, Kagoro F, Masimba J, Said Z, Temba H, Elbanna GH, Tapparel C, Zanella MC, Xenarios I, Fellay J, D'Acremont V, Kaiser L. Blood virosphere in febrile Tanzanian children. Emerg Microbes Infect. 2021 Dec;10(1):982-993.  > Pubmed
• Cosset E, Hibaoui Y, Ilmjärv S, Dietrich PY, Tapparel C, Krause KH. Modeling poliovirus infection using human engineered neural tissue enriched with motor neuron derived from embryonic stem cells. Front Cell Dev Biol. 2021 Jan 6;8:593106.  > Pubmed
• Das K, Belnoue E, Rossi M, Hofer T, Danklmaier S, Nolden T, Schreiber LM, Angerer K, Kimpel J, Hoegler S, Spiesschaert B, Kenner L, von Laer D, Elbers K, Derouazi M, Wollmann G. A modular self-adjuvanting cancer vaccine combined with an oncolytic vaccine induces potent antitumor immunity. Nat Commun. 2021 Aug 31;12(1):5195.  > Pubmed
• Filippova A, Bonini F, Efremova L, Locatelli M, Preynat-Seauve O, Béduer A, Krause KH, Braschler T. Neurothreads: Development of supportive carriers for mature dopaminergic neuron differentiation and implantation. Biomaterials. 2021 Mar;270:120707.  > Pubmed
• Immarigeon C, Frei Y, Delbare SYN, Gligorov D, Machado Almeida P, Grey J, Fabbro L, Nagoshi E, Billeter JC, Wolfner MF, Karch F, Maeda RK. Identification of a micropeptide and multiple secondary cell genes that modulate Drosophila male reproductive success. Proc Natl Acad Sci U S A. 2021 Apr 13;118(15):e2001897118.  > Pubmed
• Keskin T, Rucci B, Cornaz-Buros S, Martin P, Fusco C, Broye L, Cisarova K, Perez EM, Letovanec I, La Rosa S, Cherix S, Diezi M, Renella R, Provero P, Suvà ML, Stamenkovic I, Riggi N. A live single-cell reporter assay links intratumor heterogeneity to metastatic proclivity in Ewing sarcoma. Sci Adv. 2021 Jul 2;7(27):eabf9394.  > Pubmed
• Kessal K, Daull P, Cimbolini N, Feraille L, Grillo S, Docquier M, Baudouin C, Brignole-Baudouin F, Garrigue JS. Comparison of two experimental mouse dry eye models through inflammatory gene set enrichment analysis based on a multiplexed transcriptomic approach. Int J Mol Sci. 2021 Oct 5;22(19):10770.  > Pubmed
• Laumay F, Benchetrit H, Corvaglia AR, van der Mee-Marquet N, François P. The Staphylococcus aureus CC398 lineage: an evolution driven by the acquisition of prophages and other mobile genetic elements. Genes (Basel). 2021 Oct 30;12(11):1752.  > Pubmed
• Leonardi A, Daull P, Garrigue JS, Cavarzeran F, Docquier M, Di Stefano A, Tarricone E, Brun P. Conjunctival transcriptome analysis reveals the overexpression of multiple pattern recognition receptors in vernal keratoconjunctivitis. Ocul Surf. 2021 Jan;19:241-248.  > Pubmed
• Rausch M, Rutz A, Allard PM, Delucinge-Vivier C, Docquier M, Dormond O, Dyson PJ, Wolfender JL, Nowak-Sliwinska P. Drug repurposing to identify a synergistic high-order drug combination to treat sunitinib-resistant renal cell carcinoma. Cancers (Basel). 2021 Aug 6;13(16):3978.  > Pubmed
• Rausch M, Rutz A, Allard PM, Delucinge-Vivier C, Docquier M, Dormond O, Wolfender JL, Nowak-Sliwinska P. Molecular and functional analysis of sunitinib-resistance induction in human renal cell carcinoma cells. Int J Mol Sci. 2021 Jun 16;22(12):6467.  > Pubmed
• Renard A, Diene SM, Courtier-Martinez L, Gaillard JB, Gbaguidi-Haore H, Mereghetti L, Quentin R, Francois P, Van Der Mee-Marquet N. 12/111phiA prophage domestication is associated with autoaggregation and increased ability to produce biofilm in Streptococcus agalactiae. Microorganisms. 2021 May 21;9(6):1112.  > Pubmed
• Rouco R, Bompadre O, Rauseo A, Fazio O, Peraldi R, Thorel F, Andrey G. Cell-specific alterations in Pitx1 regulatory landscape activation caused by the loss of a single enhancer. Nat Commun. 2021 Dec 13;12(1):7235.  > Pubmed
• Seguin L, Odouard S, Corlazzoli F, Haddad SA, Moindrot L, Calvo Tardón M, Yebra M, Koval A, Marinari E, Bes V, Guérin A, Allard M, Ilmjärv S, Katanaev VL, Walker PR, Krause KH, Dutoit V, Sarkaria JN, Dietrich PY, Cosset E. Macropinocytosis requires Gal-3 in a subset of patient-derived glioblastoma stem cells. Commun Biol. 2021 Jun 10;4(1):718.  > Pubmed
• Spoerl D, Docquier M, Coattrenec Y, Seebach JD. Patients with elevated basal tryptase serum levels should be tested for hereditary alpha-tryptasemia. Eur Ann Allergy Clin Immunol. 2021 Jun 11.  > Pubmed
• Vanzan L, Soldati H, Ythier V, Anand S, Braun SMG, Francis N, Murr R. High throughput screening identifies SOX2 as a super pioneer factor that inhibits DNA methylation maintenance at its binding sites. Nat Commun. 2021 Jun 7;12(1):3337.  > Pubmed
• Weiss B, Allen GE, Kloehn J, Abid K, Jaquier-Gubler P, Curran JA. eIF4E3 forms an active eIF4F complex during stresses (eIF4FS) targeting mTOR and re-programs the translatome. Nucleic Acids Res. 2021 May 21;49(9):5159-5176.  > Pubmed
• Willemin A, Lopez-Delisle L, Bolt CC, Gadolini ML, Duboule D, Rodriguez-Carballo E. Induction of a chromatin boundary in vivo upon insertion of a TAD border. PLoS Genet. 2021 Jul 22;17(7):e1009691.  > Pubmed
• Zanella MC, Cordey S, Laubscher F, Docquier M, Vieille G, Van Delden C, Braunersreuther V, Ta MK, Lobrinus JA, Masouridi-Levrat S, Chalandon Y, Kaiser L, Vu DL. Unmasking viral sequences by metagenomic next-generation sequencing in adult human blood samples during steroid-refractory/dependent graft-versus-host disease. Microbiome. 2021 Jan 24;9(1):28.  > Pubmed