Papers including work performed at the Genomics Platform

Alphabetical order of first authors names

• Cherkaoui A, Diene SM, Renzoni A, Emonet S, Renzi G, François P, Schrenzel J. Imipenem heteroresistance in nontypeable Haemophilus influenzae is linked to a combination of altered PBP3, slow drug influx and direct efflux regulation. Clin Microbiol Infect. 2017 Feb;23(2):118.e9-118.e19.  > Pubmed
• Diene SM, Corvaglia AR, François P, van der Mee-Marquet N; Regional Infection Control Group of the Centre Region. Prophages and adaptation of Staphylococcus aureus ST398 to the human clinic. BMC Genomics. 2017 Feb 6;18(1):133.  > Pubmed
• Dietschi Q, Tuberosa J, Rösingh L, Loichot G, Ruedi M, Carleton A, Rodriguez I. Evolution of immune chemoreceptors into sensors of the outside world. Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):7397-7402.  > Pubmed
• Dorotheou D, Farsadaki V, Bochaton-Piallat ML, Giannopoulou C, Halazonetis TD, Kiliaridis S. Increased cell proliferation and gene expression of genes related to bone remodeling, cell adhesion and collagen metabolism in the periodontal kigament of unopposed molars in growing rats. Front Physiol. 2017 Feb 10;8:75.  > Pubmed
• Dranguet P, Cosio C, Le Faucheur S, Beauvais-Flück R, Freiburghaus A, Worms IAM, Petit B, Civic N, Docquier M, Slaveykova VI. Transcriptomic approach for assessment of the impact on microalga and macrophyte of in-situ exposure in river sites contaminated by chlor-alkali plant effluents. Water Res. 2017 Sep 15;121:86-94.  > Pubmed
• Fabre PJ, Leleu M, Mormann BH, Lopez-Delisle L, Noordermeer D, Beccari L, Duboule D. Large scale genomic reorganization of topological domains at the HoxD locus. Genome Biol. 2017 Aug 7;18(1):149.  > Pubmed
• Frangeul L, Kehayas V, Sanchez-Mut JV, Fièvre S, Krishna-K K, Pouchelon G, Telley L, Bellone C, Holtmaat A, Gräff J, Macklis JD, Jabaudon D. Input-dependent regulation of excitability controls dendritic maturation in somatosensory thalamocortical neurons. Nat Commun. 2017 Dec 8;8(1):2015.  > Pubmed
• Frazer S, Prados J, Niquille M, Cadilhac C, Markopoulos F, Gomez L, Tomasello U, Telley L, Holtmaat A, Jabaudon D, Dayer A. Transcriptomic and anatomic parcellation of 5-HT_3AR expressing cortical interneuron subtypes revealed by single-cell RNA sequencing. Nat Commun. 2017 Jan 30;8:14219.  > Pubmed
• Kling S, Hammer A, Netto EAT, Hafezi F. Differential gene transcription of extracellular matrix components in response to in vivo corneal crosslinking (CXL) in rabbit corneas. Transl Vis Sci Technol. 2017 Dec 12;6(6):8.  > Pubmed
• Kozlov A, Jaumouillé E, Machado Almeida P, Koch R, Rodriguez J, Abruzzi KC, Nagoshi E. A screening of UNF targets identifies Rnb, a novel regulator of Drosophila circadian rhythms. J Neurosci. 2017 Jul 12;37(28):6673-6685.  > Pubmed
• Lanthier N, Lin-Marq N, Rubbia-Brandt L, Clément S, Goossens N, Spahr L. Autologous bone marrow-derived cell transplantation in decompensated alcoholic liver disease: what is the impact on liver histology and gene expression patterns? Stem Cell Res Ther. 2017 Apr 18;8(1):88.  > Pubmed
• Lau P, Cordey S, Brito F, Tirefort D, Petty TJ, Turin L, Guichebaron A, Docquier M, Zdobnov EM, Waldvogel-Abramowski S, Lecompte T, Kaiser L, Preynat-Seauve O. Metagenomics analysis of red blood cell and fresh-frozen plasma units. Transfusion. 2017 Jul;57(7):1787-1800.  > Pubmed
• Lugli N, Dionellis VS, Ordóñez-Morán P, Kamileri I, Sotiriou SK, Huelsken J, Halazonetis TD. Enhanced rate of acquisition of point mutations in mouse intestinal adenomas compared to normal tissue. Cell Rep. 2017 Jun 13;19(11):2185-2192.  > Pubmed
• Moussounda M, Diene SM, Dos Santos S, Goudeau A, François P, van der Mee-Marquet N. Emergence of bla_NDM-7-producing Enterobacteriaceae in Gabon, 2016. Emerg Infect Dis. 2017 Feb;23(2):356-358.  > Pubmed
• Patot S, Imbert PR, Baude J, Martins Simões P, Campergue JB, Louche A, Nijland R, Bès M, Tristan A, Laurent F, Fischer A, Schrenzel J, Vandenesch F, Salcedo SP, François P, Lina G. The TIR homologue lies near resistance genes in Staphylococcus aureus, coupling modulation of virulence and antimicrobial susceptibility. PLoS Pathog. 2017 Jan 6;13(1):e1006092.  > Pubmed
• Perroud J, Bernheim L, Frieden M, Koenig S. Distinct roles of NFATc1 and NFATc4 in human primary myoblast differentiation and in the maintenance of reserve cells. J Cell Sci. 2017 Sep 15;130(18):3083-3093.  > Pubmed
• Petrenko V, Saini C, Giovannoni L, Gobet C, Sage D, Unser M, Heddad Masson M, Gu G, Bosco D, Gachon F, Philippe J, Dibner C. Pancreatic α- and β-cellular clocks have distinct molecular properties and impact on islet hormone secretion and gene expression. Genes Dev. 2017 Feb 15;31(4):383-398.  > Pubmed
• Rodríguez-Carballo E, Lopez-Delisle L, Zhan Y, Fabre PJ, Beccari L, El-Idrissi I, Huynh THN, Ozadam H, Dekker J, Duboule D. The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes. Genes Dev. 2017 Nov 15;31(22):2264-2281.  > Pubmed
• Ruppé E, Olearo F, Pires D, Baud D, Renzi G, Cherkaoui A, Goldenberger D, Huttner A, François P, Harbarth S, Schrenzel J. Clonal or not clonal? Investigating hospital outbreaks of KPC-producing Klebsiella pneumoniae with whole-genome sequencing. Clin Microbiol Infect. 2017 Jul;23(7):470-475.  > Pubmed
• van der Mee-Marquet NL, Bénéjat L, Diene SM, Lemaignen A, Gaïa N, Smet A, Haesebrouck F, Cherkaoui A, Ducournau A, Lacomme S, Gontier E, Bernard L, Mégraud F, Goudeau A, Lehours P, François P. A potential new human pathogen belonging to Helicobacter genus, identified in a bloodstream infection. Front Microbiol. 2017 Dec 18;8:2533.  > Pubmed
• Wojtas MN, Pandey RR, Mendel M, Homolka D, Sachidanandam R, Pillai RS. Regulation of m6A transcripts by the 3'-5' RNA helicase YTHDC2 is essential for a successful meiotic program in the mammalian germline. Mol Cell. 2017 Oct 19;68(2):374-387.e12.  > Pubmed
• Zakany J, Darbellay F, Mascrez B, Necsulea A, Duboule D. Control of growth and gut maturation by HoxD genes and the associated lncRNA Haglr. Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9290-E9299.  > Pubmed
• Zingg W, Soulake I, Baud D, Huttner B, Pfister R, Renzi G, Pittet D, Schrenzel J, Francois P. Management and investigation of a Serratia marcescens outbreak in a neonatal unit in Switzerland - the role of hand hygiene and whole genome sequencing. Antimicrob Resist Infect Control. 2017 Dec 11;6:125.  > Pubmed