Papers including work performed at the Genomics Platform

Alphabetical order of first authors names

• Albert B, Knight B, Merwin J, Martin V, Ottoz D, Gloor Y, Bruzzone MJ, Rudner A, Shore D. A molecular titration system coordinates ribosomal protein gene transcription with ribosomal RNA synthesis. Mol Cell. 2016 Nov 17;64(4):720-733.  > Pubmed
• Amândio AR, Necsulea A, Joye E, Mascrez B, Duboule D. Hotair is dispensible for mouse development. PLoS Genet. 2016 Dec 15;12(12):e1006232.  > Pubmed
• Bady P, Delorenzi M, Hegi ME. Sensitivity analysis of the MGMT-STP27 model and impact of genetic and epigenetic context to predict the MGMT methylation status in gliomas and other tumors. J Mol Diagn. 2016 May;18(3):350-61.  > Pubmed
• Baumert BG, Hegi ME, van den Bent MJ, von Deimling A, Gorlia T, Hoang-Xuan K, Brandes AA, Kantor G, Taphoorn MJ, Hassel MB, Hartmann C, Ryan G, Capper D, Kros JM, Kurscheid S, Wick W, Enting R, Reni M, Thiessen B, Dhermain F, Bromberg JE, Feuvret L, Reijneveld JC, Chinot O, Gijtenbeek JM, Rossiter JP, Dif N, Balana C, Bravo-Marques J, Clement PM, Marosi C, Tzuk-Shina T, Nordal RA, Rees J, Lacombe D, Mason WP, Stupp R. Temozolomide chemotherapy versus radiotherapy in high-risk low-grade glioma (EORTC 22033-26033): a randomised, open-label, phase 3 intergroup study. Lancet Oncol. 2016 Nov;17(11):1521-1532.  > Pubmed
• Beccari L, Yakushiji-Kaminatsui N, Woltering JM, Necsulea A, Lonfat N, Rodríguez-Carballo E, Mascrez B, Yamamoto S, Kuroiwa A, Duboule D. A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus. Genes Dev. 2016 May 15;30(10):1172-86.  > Pubmed
• Colinas M, Eisenhut M, Tohge T, Pesquera M, Fernie AR, Weber AP, Fitzpatrick TB. Balancing of B6 vitamers is essential for plant development and metabolism in Arabidopsis. Plant Cell. 2016 Feb;28(2):439-53.  > Pubmed
• Cordey S, Vu DL, Schibler M, L’Huillier AG, Brito F, Docquier M, Posfay-Barbe KM, Petty TJ, Turin L, Zdobnov EM, Kaiser L. Astrovirus MLB2, a new gastroenteric virus associated with meningitis and disseminated infection. Emerg Infect Dis. 2016 May;22(5):846-53.  > Pubmed
• Diene SM, François P, Zbinden A, Entenza JM, Resch G. Comparative genomics analysis of Streptococcus tigurinus strains identifies genetic elements specifically and uniquely present in highly virulent strains. PLoS One. 2016 Aug 9;11(8):e0160554.  > Pubmed
• Frangeul L, Pouchelon G, Telley L, Lefort S, Luscher C, Jabaudon D. A cross-modal genetic framework for the development and plasticity of sensory pathways. Nature. 2016 Sep 26;538(7623):96-98.  > Pubmed
• Kim S, Corvaglia AR, Léo S, Cheung A, Francois P. Characterization of RNA helicase CshA and its role in protecting mRNAs and small RNAs of Staphylococcus aureus strain Newman. Infect Immun. 2016 Jan 11;84(3):833-44.  > Pubmed
• Lugli N, Kamileri I, Keogh A, Malinka T, Sarris ME, Talianidis I, Schaad O, Candinas D, Stroka D, Halazonetis TD. R-spondin 1 and noggin facilitate expansion of resident stem cells from non-damaged gallbladders. EMBO Rep. 2016 May;17(5):769-79.  > Pubmed
• Makhlouf AM, Chitikova Z, Pusztaszeri M, Berczy M, Delucinge-Vivier C, Triponez F, Meyer P, Philippe J, Dibner C. Identification of CHEK1, SLC26A4, c-KIT, TPO and TG as new biomarkers for human follicular thyroid carcinoma. Oncotarget. 2016 Jul 19;7(29):45776-45788.  > Pubmed
• Park JS, Cederroth CR, Basinou V, Meltser I, Lundkvist G, Canlon B. Identification of a circadian clock in the inferior colliculus and its dysregulation by noise exposure. J Neurosci. 2016 May 18;36(20):5509-19.  > Pubmed
• Prados J, Linder P, Redder P. TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens. BMC Genomics. 2016 Nov 2;17(1):849.  > Pubmed
• Rodrigues T, Krawczyk M, Skowronska-Krawczyk D, Matter-Sadzinski L, Matter J-M. Delayed neurogenesis with respect to eye growth shapes the pigeon retina for high visual acuity. Development. 2016 Dec 15;143(24):4701-4712.  > Pubmed
• Sabatasso S, Mangin P, Fracasso T, Moretti M, Docquier M, Djonov V. Early markers for myocardial ischemia and sudden cardiac death. Int J Legal Med. 2016 Sep;130(5):1265-80.  > Pubmed
• Seth C, Mas C, Conod A, Mueller J, Siems K, Kuciak M, Borges I, Ruiz I Altaba A. Long-lasting WNT-TCF response blocking and epigenetic modifying activities of withanolide F in human cancer cells. PLoS One. 2016 Dec 14;11(12):e0168170.  > Pubmed
• Sharma R, Ritler D, Meister P. Tools for DNA adenine methyltransferase identification analysis of nuclear organization during C. elegans development. Genesis. 2016 Apr;54(4):151-9.  > Pubmed
• Telley L, Govindan S, Prados J, Stevant I, Nef S, Dermitzakis E, Dayer A, Jabaudon D. Sequential transcriptional waves direct the differentiation of newborn neurons in the mouse neocortex. Science. 2016 Mar 25;351(6280):1443-6.  > Pubmed
• Tilbrook K, Dubois M, Crocco CD, Yin R, Chappuis R, Allorent G, Schmid-Siegert E, Goldschmidt-Clermont M, Ulm R. UV-B perception and acclimation in Chlamydomonas reinhardtii. Plant Cell. 2016 Apr;28(4):966-83.  > Pubmed
• van der Mee-Marquet N, Diene SM, Chopin F, Goudeau A, François P. Enigmatic occurrence of NDM-7 enzyme in the community. Int J Antimicrob Agents. 2016 Jun;47(6):505-7.  > Pubmed
• Von Dach E, Diene SM, Fankhauser C, Schrenzel J, Harbarth S, François P. Comparative genomics of community-associated methicillin-resistant Staphylococcus aureus shows the emergence of clone ST8-USA300 in Geneva, Switzerland. J Infect Dis. 2016 May 1;213(9):1370-9.  > Pubmed
• Wani AH, Boettiger AN, Schorderet P, Ergun A, Münger C, Sadreyev RI, Zhuang X, Kingston RE, Francis NJ. Chromatin topology is coupled to Polycomb group protein subnuclear organization. Nat Commun. 2016 Jan 13;7:10291.  > Pubmed
• Zufferey A, Ibberson M, Reny JL, Nolli S, Schvartz D, Docquier M, Xenarios I, Sanchez JC, Fontana P. New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach. Hum Genet. 2016 Apr;135(4):403-14.  > Pubmed