Papers including work performed at the Genomics Platform

Alphabetical order of first authors names

• Antigny F, Konig S, Bernheim L, Frieden M. Inositol 1,4,5 trisphosphate receptor 1 is a key player of human myoblast differentiation. Cell Calcium. 2014 Dec;56(6):513-21.  > Pubmed
• Cosset É, Petty TJ, Dutoit V, Cordey S, Padioleau I, Otten-Hernandez P, Farinelli L, Kaiser L, Bruyère-Cerdan P, Tirefort D, Amar El-Dusouqui S, Nayernia Z, Krause KH, Zdobnov EM, Dietrich PY, Rigal E, Preynat-Seauve O. Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral-like type I interferon gene response. Int J Cancer. 2014 Sep 15;135(6):1381-9.  > Pubmed
• Falentin H, Naquin D, Loux V, Barloy-Hubler F, Loubière P, Nouaille S, Lavenier D, Le Bourgeois P, François P, Schrenzel J, Hernandez D, Even S, Le Loir Y. Genome sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61. Genome Announc. 2014 Jan 16;2(1). pii: e01176-13.  > Pubmed
• Hernandez D, Seidl K, Corvaglia AR, Bayer AS, Xiong YQ, François P. Genome sequences of sequence type 45 (ST45) persistent methicillin-resistant Staphylococcus aureus (MRSA) bacteremia strain 300-169 and ST45 resolving MRSA bacteremia strain 301-188. Genome Announc. 2014 Mar 13;2(2). pii: e00174-14.  > Pubmed
• Hernandez D, Tewhey R, Veyrieras JB, Farinelli L, Østerås M, François P, Schrenzel J. De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads. Bioinformatics. 2014 Jan 1;30(1):40-9.  > Pubmed
• Iwasaki M, Paszkowski J. Identification of genes preventing transgenerational transmission of stress-induced epigenetic states. Proc Natl Acad Sci U S A. 2014 Jun 10;111(23):8547-52.  > Pubmed
• Kim S, Reyes D, Beaume M, Francois P, Cheung A. Contribution of teg49 small RNA in the 5' upstream transcriptional region of sarA to virulence in Staphylococcus aureus. Infect Immun. 2014 Oct;82(10):4369-79.  > Pubmed
• Knight B, Kubik S, Ghosh B, Bruzzone MJ, Geertz M, Martin V, Dénervaud N, Jacquet P, Ozkan B, Rougemont J, Maerkl SJ, Naef F, Shore D. Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription. Genes Dev. 2014 Aug 1;28(15):1695-709.  > Pubmed
• Lonfat N, Montavon T, Darbellay F, Gitto S, Duboule D. Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci. Science. 2014 Nov 21;346(6212):1004-6.  > Pubmed
• Meltser I, Cederroth CR, Basinou V, Savelyev S, Lundkvist GS, Canlon B. TrkB-mediated protection against circadian sensitivity to noise trauma in the murine cochlea. Curr Biol. 2014 Mar 17;24(6):658-63.  > Pubmed
• Murthy S, Niquille M, Hurni N, Limoni G, Frazer S, Chameau P, van Hooft JA, Vitalis T, Dayer A. Serotonin receptor 3A controls interneuron migration into the neocortex. Nat Commun. 2014 Nov 20;5:5524.  > Pubmed
• Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D. Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci. Elife. 2014 Apr 29;3:e02557.  > Pubmed
• Peton V, Bouchard DS, Almeida S, Rault L, Falentin H, Jardin J, Jan G, Hernandez D, François P, Schrenzel J, Azevedo V, Miyoshi A, Berkova N, Even S, Le Loir Y. Fine-tuned characterization of Staphylococcus aureus Newbould 305, a strain associated with mild and chronic mastitis in bovines. Vet Res. 2014 Oct 14;45:106.  > Pubmed
• Petty TJ, Cordey S, Padioleau I, Docquier M, Turin L, Preynat-Seauve O, Zdobnov EM, Kaiser L. Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study. J Clin Microbiol. 2014 Sep;52(9):3351-61.  > Pubmed
• Posada AC, Kolar SL, Dusi RG, Francois P, Roberts AA, Hamilton CJ, Liu GY, Cheung A. Importance of bacillithiol in the oxidative stress response of Staphylococcus aureus. Infect Immun. 2014 Jan;82(1):316-32.  > Pubmed
• Pouchelon G, Gambino F, Bellone C, Telley L, Vitali I, Lüscher C, Holtmaat A, Jabaudon D. Modality-specific thalamocortical inputs instruct the identity of postsynaptic L4 neurons. Nature. 2014 Jul 24;511(7510):471-4.  > Pubmed
• Ramundo S, Casero D, Mühlhaus T, Hemme D, Sommer F, Crèvecoeur M, Rahire M, Schroda M, Rusch J, Goodenough U, Pellegrini M, Perez-Perez ME, Crespo JL, Schaad O, Civic N, Rochaix JD. Conditional depletion of the Chlamydomonas chloroplast ClpP1 protease activates nuclear genes involved in autophagy and plastid protein quality control. Plant Cell. 2014 May 30;26(5):2201-2222.  > Pubmed
• Schnell A, Chappuis S, Schmutz I, Brai E, Ripperger JA, Schaad O, Welzl H, Descombes P, Alberi L, Albrecht U. The nuclear receptor REV-ERBα regulates Fabp7 and modulates adult hippocampal neurogenesis. PLoS One. 2014 Jun 16;9(6):e99883.  > Pubmed
• Seguín-Estévez Q, Dunand-Sauthier I, Lemeille S, Iseli C, Ibberson M, Ioannidis V, Schmid CD, Rousseau P, Barras E, Geinoz A, Xenarios I, Acha-Orbea H, Reith W. Extensive remodeling of DC function by rapid maturation-induced transcriptional silencing. Nucleic Acids Res. 2014 Sep;42(15):9641-55.  > Pubmed
• Sharma R, Jost D, Kind J, Gómez-Saldivar G, van Steensel B, Askjaer P, Vaillant C, Meister P. Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans. Genes Dev. 2014 Dec 1;28(23):2591-6.  > Pubmed
• Soulié P, Chassot A, Ernandez T, Montesano R, Féraille E. Spatially restricted hyaluronan production by Has2 drives epithelial tubulogenesis in vitro. Am J Physiol Cell Physiol. 2014 Oct 15;307(8):C745-59.  > Pubmed
• van der Mee-Marquet NL, Corvaglia A, Haenni M, Bertrand X, Franck JB, Kluytmans J, Girard M, Quentin R, François P. Emergence of a novel subpopulation of CC398 Staphylococcus aureus infecting animals is a serious hazard for humans. Front Microbiol. 2014 Dec 5;5:652.  > Pubmed
• Whiteson KL, Hernandez D, Lazarevic V, Gaia N, Farinelli L, François P, Pilo P, Frey J, Schrenzel J. A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis. BMC Genomics. 2014 Mar 1;15:169.  > Pubmed
• Woltering JM, Noordermeer D, Leleu M, Duboule D. Conservation and divergence of regulatory strategies at Hox Loci and the origin of tetrapod digits. PLoS Biol. 2014 Jan;12(1):e1001773.  > Pubmed
• Zbinden A, Quiblier C, Hernandez D, Herzog K, Bodler P, Senn MM, Gizard Y, Schrenzel J, François P. Characterization of Streptococcus tigurinus small-colony variants causing prosthetic joint infection by comparative whole-genome analyses. J Clin Microbiol. 2014 Feb;52(2):467-74.  > Pubmed