Analysis

Data analysis outline

We propose solutions for analysis, visualization, management and interpretation of highthroughput genomic data (Next Generation Sequencing, NanoString and microarrays).

Next Gen Sequencing (NGS)

  • Quality control (QC)
  • Mapping to reference genome

Transcriptomics

  • Differentially expressed gene (DEG) analysis
  • Annotations
  • Visualization (PCA, heatmaps, Venn diagrams, ...)
  • KEGG enrichment and pathway analysis
  • GeneGO MetaCore access

Variant calling (DNAseq, exome)

  • List of variants
  • Annotations
  • Prioritization

Others (CRISPR, ...)

NanoString - Microarrays

  • Differentially expressed gene (DEG) analysis
  • Visualization (PCA, heatmaps, Venn diagrams, ...)

Report

For all types of analysis, a detailed report file is provided with the ouput files.

Additionally

  • Data submission to public data repository (GEO, ArrayExpress, ...)
  • Support for data management plan (DMP)

Minimal information to provide

  • Species – release genome
  • Experimental design:
    • sample ID
    • experimental factor (littermate, treatment, ...)
    • biological conditions (A, B, C, ...)
    • comparisons (A vs. B, C vs. B, ...)

Bioinformaticians

Natacha Civic Natacha Civic portrait Natacha Civic, PhD
Bioinformatician

  +41 (0)22 379 59 60   -   Céline Delucinge Vivier Céline Delucinge Vivier portrait Céline Delucinge Vivier
Bioinformatician

  +41 (0)22 379 59 60